Sentence examples for methods we reconstructed from inspiring English sources

Using maximum likelihood based methods we reconstructed putative ancestral sequences and probed the tree for evidence of positive selection.

After a representative species selection (see Materials and methods), we reconstructed the maximum likelihood and Bayesian phylogenies of the 139 corresponding sequences.

Using four different methods (Bayesian coalescent approaches, Bayesian inference, maximum likelihood, and neighbor-joining methods), we reconstructed an evolutionary phylogenomic tree from 22 mitochondrial genome sequences consisting of 4 newly determined and 18 published sequences of the baleen whales.

Using these predicted TF-target pairs from each of the methods, we reconstructed two networks of different sizes that is, less than 40,000 edges and less than 70,000 edges.

Using representative protein sequences of the RUNX and RUNT genes (see Methods), we reconstructed a molecular tree (Fig. 4, top left) showing the relationship between the three RUNX proteins, FrRUNT and TnRUNT, and the runt proteins of Ciona intestinalis and Branchiostoma floridae (amphioxus).

Using parsimony and maximum likelihood (ML) methods, we reconstructed the pattern of thoracic evolution onto the established phylogenetic tree of the ants (Brady et al., 2006; Moreau et al., 2006) for 54 genera representing 21 subfamilies plus two genera of wasps as outgroups.

Using new, but related, methods we reconstruct the rings describing the evolution of the Alpha (A -, B -, (B)-, and Gamma - proteobacteria.

Taking advantage of the mining method, we reconstructed the remaining adjacent coal seams.

To validate this quantification method, we reconstructed the well-known fluorescence emission spectrum of GFP and the bioluminescence spectrum of Aeq by means of the above four channel measurements and corrections (Table 1).

Using a maximum likelihood-based method, we reconstructed GC3 at several ancestral nodes.

Using our method, we reconstructed draft genome-scale metabolic models for 126 human tissue and cell types.