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They construct a bipartite metabolic network consisting of compound and reaction nodes and subsequently enumerate all possible paths between a source (d-glucose) and a target compound (pyruvate) under certain constraints.
A metabolic network consisting of n metabolites and m reactions can be represented by a stoichiometric matrix, denoted by N, where the entry n ij represents the stoichiometric coefficient of metabolite i in reaction j (Price et al., 2004).
A metabolic network consisting of n metabolites and m reactions can be represented by a stoichiometric matrix, denoted S, in which the S i, j represents the stoichiometric coefficient of metabolite i in reaction j (Price et al., 2004).
A metabolic network consisting of m metabolites and n reactions can be represented by a stoichiometric matrix S, where the entry S ij represents the stoichiometric coefficient of metabolite i in reaction j (Price et al., 2004).
The method was used to search for pathways from a metabolic network consisting of all reactions found in a comprehensive metabolic reaction database, and to subsequently rank the pathways according to the degree of support from the T. reesei's genome [ 21].
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The colon metabolic network consists of 2,934 metabolites and 1,773 enzymes involved in 3,060 reactions.
Modeling the metabolic network consists in choosing which biological objects are associated to nodes and edges.
The constructed metabolic network consists of 3,658 nodes (metabolites) and 4,378 edges (reactions).
The initial metabolic network consists of connections between the gene sequences, enzymes, metabolites, reactions, and biochemical pathways.
A metabolic network consists of many reactions and transport processes associated with the production and depletion of cellular metabolites.
The metabolic network consisted of the 16 reactions of the TCA cycle using pyruvate and glutamate as substrates described by Table 1.
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