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Exact(6)
The mean coverage achieved was 130× in the tumor and 133× in the normal tissues.
The mean coverage achieved was 365× in TCS with 354× in tumors and 375× in the normal samples.
The mean coverage achieved ranged from 102 to 225 reads per site in the tumors and 119 to 188 reads per site in the germline.
These contigs were composed of 14,972 reads (8.01 % of the whole genomic library) and the mean coverage achieved 34.1x per site after read mapping.
Additional coverage for non-European populations: An additional set of approximately 50K SNPs, covered in the 1KGP Phase I reference panel, were additionally extracted from the Affymetrix-Biobank array to improve the mean coverage achieved in African and other populations.
The mean coverage achieved for each sample was 1196 for Panel A and 1309 for Panel B. All detected variants showed a mean coverage of 592 and a mean Qscore of 39 (99.87 % accuracy).
Similar(54)
This re-affirms the need for 60X mean coverage to achieve a very high accuracy INDEL call set.
Results from the Good's coverage achieved after subsampling are presented in Additional file 1 (mean: 85%; SD: 4%) and are also supportive of good coverage.
They indicate the range of geographical coverage achieved across London.
The % CpG coverage achieved by RRBS is 3.3%.
Pileup coverage files were uploaded to the Gaggle Genome Browser to inspect the read coverage achieved.
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