Sentence examples for matches were aligned from inspiring English sources

The protein protein matches were aligned with blast_extend_repraze, a modified Smith-Waterman[27] algorithm that maximally extends regions of similarity across frameshifts.

All sequence matches selected from the HMMSEARCH output were aligned using PRANK [25], except for the HAP family whose matches were aligned back to the HMM using the HMMALIGN program.

The protein-protein matches were aligned with blast_extend_repraze, a modified Smith-Waterman [ 34] algorithm that maximally extends regions of similarity across frameshifts.

The most significant four matches were aligned, using Clustal Omega, against representatives of the RXR gene family and the related NR2F gene family, and selected nematode genes annotated as RXR homologues.

The most significant four matches were aligned against representatives of the RXR gene family, including genes from other nematodes annotated as RXR homologues [ 22], and representatives of the related NR2F gene family.

The matches are sorted and grouped by proximity and those regions of the genome with a minimum of 2 k contiguous matches are aligned with the query sequence.

The unidentified ITS sequences that found an Inocybe sequence as their closest BLAST match were aligned to the ITS alignment that featured that matching sequence using Clustal W. Naucoria submelinoides, Crepidotus mollis, and I. dulcamara were used as outgroups for all but one alignment corresponding to the subgenus Mallocybe [ 12] in which I. dulcamara was included in the ingroup [ 23].

Therefore all oligonucleotides for which BLAST found no perfect match were aligned in a second run using 'JAligner' [ 15].

Sure, that view may change if ever there is a final-day Anschluss like that in 1982 which means World Cup group-matches are aligned, but that on-pitch extreme is unlikely in the A-League.

The stretch where they match is aligned with the audio using the Viterbi algorithm.

Next, homologous ESTs from as many as possible of the four legumes with the same best Arabidopsis protein match are aligned.