Sentence examples for matches were assigned from inspiring English sources
Matches were scored on a binary scale, wherein a significant match score was assigned a value of one; non-significant matches were assigned a zero.
In MaxQuant peptide matches were assigned to protein groups (a cluster of a base protein plus additional proteins matching to a subset of the same peptides).
SPANNER was always more precise than LCA and less than best BLAST, as best BLAST matches were assigned at the most precise taxonomic rank possible.
KEGG annotations for M. sprengeri transcripts were based on sequence similarity searches against the KEGG database, and matches were assigned the corresponding enzyme commission (EC) number.
We carried out functional and pathway analyses using the Kyoto Encyclopedia of Genes and Genomes (KEGG; http://www.genome.jp/kaas-bin/kaas_main?mode=est_b 22), and 180,020 sequences with significant matches were assigned to 276 KEGG pathways.
A database with a total of 3858 cases of sporadic breast cancer was used to find four matched controls for each case and a randomized matches were assigned between BRCA1 and patients with sporadic BC of the same age at diagnosis (range, between 26 and 76 ± 4 years), tumour grade (I, II, and III), and stage (I, II, and III).
RNA-tags that have no BLAST matches are assigned to the special node "no hits" and those unassigned due to algorithmic reasons (e.g. below an applied threshold) are placed on the special node "unassigned".
Consequently, chains that consist of a number of significant matches are assigned larger chain scores than those with fewer, or many less significant matches.
The methods presented here are general enough to handle weight functions other than the obvious one where all matches are assigned a weight of one.
Recovered sequences <98% similar to the closest prey match were assigned to familial OUT's based on their topographical position relative to taxonomic lineages in neighbor joining bootstrapped consensus trees constructed in MEGA 3.1[37] using closely matching sequences from BLAST analyses.
For the 41,350 sequences with hits in the MtGI database, Gene Ontology (GO) categories of their best match were assigned to each sequence.
