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Exact(6)
The prior CREBBP data matched a region of non-specific bands in our blot, but protein bands of appropriate molecular weight were also present in our blots.
The first was a wildtype Nanos Response Element (wildtype NRE1) that matched a region from BoxB of the hunchback NRE1.
A probe was retained if at least 28 of the bases matched a region in the genome with less than a two base gap within the sequence.
This region also had to fall within an established exon for a RefSeq rat gene, or within an exon sequence for a RefSeq mouse or human gene whose entire sequence matched a region in the rat genome.
However, the amplicon sequences established for these two BACs perfectly matched a region of Brassica oleracea chromosome 1 which is very similar but not identical to the region of interest (data not shown).
One sequence (XP_002586006) matched a region between the active site Cys and His and thus did not overlap any of the active site residues; the other three overlapped the N-terminal two residues only.
Similar(54)
A 3′-Minor Groove Binding probe was designed to specifically match a region of the strain O sequence and was able to discriminate a single base mutation or a two-base difference in the corresponding sequences of the non-target strains.
The top-scoring hit (Z-score=7.3, RMSD=2.5 Å) was the SLIDE domain of the DmISWI chromatin remodeller, which matches a region of Chd1-DBD encompassing helices α5 10.
In order to place sequences on the optical map we need some notion of how well the restriction site pattern within a sequence matches a region of the optical map.
The 5' and 3' ends of SINV_00084 are similar to fragments of insect Golgi SNAP receptor complex genes, while the highly internally repetitive central portion of the gene matches a region of the Rickettsia massiliae dnaE2 gene, RMA_0751, which is part of the tra cluster region [ 42].
Confirmed Class 2 sequences showed a consistent alignment pattern: part of the sequence matched one region of the genome and the other part of the sequence matched a different region though in an inverted orientation.
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