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Furthermore, cp genomes can provide effective genetic markers for evolutionary studies from population level.
Consequently, we concluded that ITS2 gene fragments were suitable markers for evolutionary studies in A. cajennense.
Mitochondrial DNA-derived sequences have become popular markers for evolutionary studies, as their comparison may yield significant insights into the evolution of both the organisms and their genomes.
These characteristics may be taxon-specific and can potentially be used as genetic markers for evolutionary and population genetic studies of pentatomoid species.
To further explore the utility of AHE markers for evolutionary inference, we inferred divergence history parameters for the five lineage-pairs for which we had prior estimates of divergence history from population samples of transcriptomes [ 28].
In the past few years, microRNAs have gained attention as alternative sequence markers for evolutionary modeling and phylogenetic analysis (Sempere et al. 2006, 2007; Wheeler et al. 2009; Rota-Stabelli et al. 2011).
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Insect mitochondrial genomes (mitogenomes) are the most extensively used genetic marker for evolutionary and population genetics studies of insects.
The detection of the atp6 intron and the region containing ORF 1 and 2 provides a polar and datable marker for evolutionary studies of the fungus.
In the case of bovids, the retroposon Bov-A2, a SINE which is widely distributed in ruminants' genomes, is detected and used as a genetic marker for evolutionary classification.
Glutamine synthetase has long been considered a good molecular marker for evolutionary studies because, similar to the 16S rRNA gene, it is a universally present and essential component of most living organisms and therefore may be constrained to evolve at a slow rate [ 4, 28].
The analysis of K-mer features, which are good markers for inferring evolutionary histories of organisms across both large and small evolutionary distances and regardless of the genome size variation, may appear to behave differently from other methods when depicting phenotypic behaviors because K-mer features contain insufficient functional information.
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