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Tissue-specific promoter sequence sets were assembled according to marker gene data from Schmid et al. (2005).
Therefore, the prediction of the functional capabilities of a microbial community based on marker gene data would be highly beneficial.
An alternative way to use molecular information for sampling is to use marker gene data as a way to score the allelic richness of a sample.
Based on the phylogenetic placement approach we built Séance, a community analysis pipeline focused on the analysis of 18S marker gene data.
Similarly, other CPK substrate transcription factors (ERF1 or CZF1/ZFAR1) were co-expressed as effectors, but neither of them resulted in significant transactivation of the GUS marker gene (data not shown).
On a separate matter, although it is clear that data sets of barcode amplicons do not provide functional information, it is interesting to note the development of programs such as PICRUSt [ 87], which predicts the functional composition of a metagenome using marker gene data and a database of reference genomes.
Similar(54)
MEF from JunB-deficient embryos were indistinguishable from WT MEF in terms of TG accumulation as well as expression of adipogenic and lipolytic marker genes (data not shown).
Consistent with this hypothesis, in the present study, blood samples of 17 early-stage EGP-negative patients were found positive for one or more of the other three marker genes (data not shown).
For example, in pre-clinical models, blockade of the angiogenic ligand Dll4 results in increased MVD [ 18, 33] and endothelial cell marker genes (data not shown), but inhibits tumor growth, thus clearly showing that MVD changes are not predictive of anti-angiogenic treatment efficacy.
We have developed these two solutions in our server, implementing a database of microarray marker genes (Marker Genes Data Base).
There are many standalone tools, which may be used for the analysis of 16S rRNA marker gene sequencing data and the WGS data.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com