Reads from both AS and SMS were also aligned allowing for 25 maximum mappings to assess the distribution between uniquely- and multiply- mapped reads at the gene level, although only single-best mappings were used for quantification and comparison purposes.
The positive effect of melodic input was still observed when the linguistic and melodic information was decoupled and variable syllable-pitch mappings were used, such that there was no correlation between linguistic and melodic transitional probabilities (Experiment 3).
The mappings were used for detection of variations (SNPs and InDels) using basic variant calling tool from CLC genomic workbench version 7.0.0.
In general, the high-confidence mappings were used for the basis of organization, while the low-confidence mappings provided additional support.
In the miRDeep2 module, read mappings were used to excise putative miRNA precursors according to stack height and all sequenced reads were aligned to these potential precursors.
6, 16, 17 Ontology-based phenomic mappings were used in human phenotypes, 18, 19 cellular phenotypes, 20 fission yeast, 21 disease annotations, 22 and plants.
