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Most of these errors arise from failing to find a seed during the mapping step of the algorithm.
The mapping step of Blast2GO identified 37,918 (30.7%) contigs with GO terms.
The mapping step of Blast2GO resulted in association of 22,728 (72.8%) unigenes with GO terms [ 25].
As improvements are made to the genome assembly and to DNA sequence length and quality, we anticipate significant improvements in the mapping step of the GBS analysis pipeline.
A map with a more conservative marker order, obtained by stopping the mapping process at the second mapping step of JoinMap, was generated and is provided in Table S4.
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Such mapping step remains a clear bottleneck of this forward genetic strategy in any model organisms.
Here we refer to this type of contacts as type F-F (fully mapped/fully mapped, Step 5 of Figure 1).
Given the sequence S = {j 1, j 2, …, j |JS|} and its ith task j i, S ensures that the Map step of j i starts after all Map steps of j k (1 ≤ k < i) finish, i.e., the earliest finished time of the Map step of j i is ∑ k ∈ [1,i] TC m (j k ).
At the same time, allocating jobs based on the proposed scheduling strategy, the finished time of the Map step of j i, COT m (j i ), also equals to ∑ k ∈ [1,i] TC m (j k ).
Given a penalty threshold β(β > 1), if ( T{C}_m j)>overline{T}{overline{C}}_mcdot beta ), then we think that the Map step of j is too long, and with the same reason, if ( T{C}_r(j)>overline{T}{overline{C}}_rcdot beta ), then we think that the Reduce step of j is too long.
- In the Sepsis+NE group, the protocol described for the Sepsis group was applied, NE being started to obtain a MAP step of 160 mmHg (baseline step).
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