Sentence examples for alignment step of from inspiring English sources
A recent re-implementation of M-Coffee in the SeqAn (Doering et al., 2008) alignment library shows that the multiple alignment step of M-Coffee is about twice faster than standard consistency-based aligners based on pair-wise alignments like ProbCons or Promals (Rausch et al., 2008).
This self-healing allows for a single alignment step of the PME film and subsequent "cut and paste" assembly for multi-axis actuation of a self-folded soft-robotic gripper from a single degree of freedom optical input.
However, no more than 19 nodes (8 cores per node) in the alignment step of any pulse were used in this study.
It has been reported that loss of reads (LOR) issue happens in the alignment step of sequencing data processing (Kim et al., 2013).
> -wrap-foot> A major reduction in the execution time of sequence database searches can be achieved by an heuristic filter that selects sequences for the next CPU-expensive alignment step of the core algorithm.
The multiple alignment problem is then reduced to to subsequent alignment steps of individual sequences to a growing multiple alignment graph.
Before going into the details of the alignment step, the feature vectors of this study are defined first.
Finally, the PCAIN methodology provides for utilizing the fold-conserved residues as "anchors" in the target-template sequence alignment step, thus increasing efficacy of conventional alignment protocols.
In the alignment step the FASTA file of non-redundant PM probes generated in the last step is aligned against the corresponding genomic sequence files in softmasked-dusted fasta format.
In addition, we note that the alignment step during data processing of the complex GCxGC-MS data is a difficult step that tends to affect the number of analytes reproducibly detected as more (and diverse) samples are added to the analysis.
Home-made Perl scripts were used for revising the genome of T. rubripes to obtain an 'intermediate reference' (IR), which was used as the reference in the next run of alignment step from which new SNPs and Indels were extracted from.
