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Exact(7)
For instance, reads with are equally mapped to multiple locations in MAQ are given a quality mapping score of zero and are here considered 'unmapped'unmapped
Display thresholds for mapping plots were computed as the maximum mapping score of non-coding sequence from the Drosophila locus in question compared as described to non-coding sequence from all other tephritid loci.
Variants and small indels with a BWA consensus score of 30 or greater and a mapping score of 10 or greater were incorporated into the sequence.
If a read mapped equally well to multiple locations (therefore producing a mapping score of zero), MAQ randomly returned one of the locations.
We mapped reads from each isolate onto the reference genome using SSAHA v2.2.1 [ 17] with a minimum mapping score of 30.
Further filtering of the SNPs was done with a custom Perl script that removed SNPs with a consensus score <20, a SNP quality score <20, and a minimum mapping score of 60.
Similar(52)
The RPKM values shown are from the combined mapping scores of two distinct biological samples at each time point.
M, on the other hand, is the function defined to be the sum of best mapping scores of all anchors mapped to the region.
The RNA-seq results shown are from two separate technical replicates, and we also show the combined mapping scores of those two samples at each time point (Additional file 3).
On UKBench, 27 descriptors with varying codebooks surpassed the baseline MAP score of 0.8159.
In UCID, the best performing SIMPLE descriptor (gaussRnd-CEDD) achieves a MAP score of 0.7955.
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