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(d) TEM cross section of sample b and (e) EDX mapping of sample b.
The anthropogenic origin of substantial contamination was confirmed through mapping of sample locations relative to contaminant sources.
The mapping of sample set in low dimension space has the maximum variance.
Mapping of sample read pools to reference sequences revealed several trends, including decreased alignment success with increased read length and decreased variant recovery with increased divergence.
In addition to imaging based on tissue reflectivity, PS-OCT also enables depth-resolved mapping of sample polarization properties such as phase-retardation, birefringent axis orientation, Stokes vectors, and degree of polarization uniformity (DOPU).
An example set of mapping and variant call commands is given in Additional file 7. Fragmentation bias and misincorporation rates were evaluated from mapping of sample read pools using mapDamage v2.0, under default parameters but with maximum read lengths set to 90 bp (-l 90) [ 18].
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Fig. 1 Map of sample locations.
(a) Map of sample locations and presence of tephra.
The outputs of the DoG model, as the edge maps of sample patterns, are displayed in Figs. 3, 4, 5 and 6.
Fig. 1 Left map of sample sites (YNP1-2 and BP1-5) within YNP and approximate distance and direction of GBS sites and right number of long, high %id scaffolds shared between pairs of sites.
The spatial topography of regional thinning parallels that illustrated with the statistical map of Sample 1a alone (Fig. 2).
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