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We mapped the sequences of all up- and down-regulated sugarcane probes to the recently sequenced sorghum genome (BTx623; http://www.phytozome.net/cgi-bin/gbrowse/sorghum/) using GenomeThreader [12].
We mapped the sequences of hairpins instead of miRNAs to the mouse genome (mm7) using Blastn program.
In our previous analyses, we first converted colors to bases directly, and mapped the sequences in base space.
We previously mapped the sequences of four transcriptional units from the A and B subfamilies onto their genomic blocks [ 15].
To reveal the molecular events behind DGE profiles, we mapped the sequences of the DGE libraries to our transcriptome reference database generated in the above mentioned Illumina sequencing.
In the present study, we mapped the sequences of small RNAs other than virus-derived siRNAs to the Arabidopsis genome and assigned each small RNA.
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MH mapped the sequencing reads to the reference genome.
EAH assembled the transcriptomes and mapped the sequencing reads, and participated in the study design.
The model explicitly mapped the sequence to folding stability and fitness.
Next, we used the ABI SOLiD System to perform massively parallel ligation sequencing and mapped the sequence reads to human reference sequence [release Mar. 2006 (NCBI36/hg18)].
Using the homoeo-SNP index, we again mapped the sequence reads from the nine diploids, this time using the SNP-tolerant mapping ("-v" option) of GSNAP.
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