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In order to locate full-length cDNAs on the catfish BAC-based physical map and genetic linkage map, all full-length cDNAs were searched against catfish BAC end sequences (BES) [15] with significance of E-value < 1e-20.
The relationship of physical map and genetic map was built up based on the SNP-associated BES and PMCSS.
As a result, 105 and 237 PvRGLs were mapped to the P. vulgaris FPC physical map and genetic map, respectively.
As reported earlier, there was some inconsistency existed between physical map and genetic map regarding the marker order and positions.
The fraction of contigs that are in disagreement between the physical map and genetic map is used to estimate the error rate in the FPC assembly.
These transposable elements have been anchored in and integrated with the soybean physical map and genetic map, and are browsable and visualizable at any scale along the 20 soybean chromosomes, along with predicted genes and other sequence annotations.
Similar(54)
In combination with high-density single nucleotide polymorphism (SNP) (Lander1996) molecular markers, quantitative trait locus (QTL) mapping and genetic effect analysis were performed on five yield related factors.
In addition to this rather limited spectrum of observed phenotypes (synthetic sick/lethal vs. non-interacting pairs), quantitative phenotypes, such as the relative growth rate of yeast colonies, have recently been explored systematically using high-throughput screening approaches like epistatic miniarray profiling (E-MAP) and genetic interaction mapping (GIM) [7], [8].
This hypothesis may be testable with fate mapping and genetic manipulation studies of developing brain circuits.
RG carried out the linkage maps and genetic diversity analysis, and revised the manuscript.
Male and female phenotypic data can be analyzed separately for QTL mapping and genetic correlations.
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