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Errors in map order would have no effect on the single SNP analysis, but may lead to inference of haplotype alleles that do not actually exist.
Missing data can lead to inference of highly supported but wrong topologies (see [ 22]).
Moreover, they can lead to inference of spurious attractor cycles that do not correspond to any biological state [ 8].
Simulation studies show that the trimmed datasets returned by BMGE lead to inference of accurate trees, in particular when in presence of multiple alignments including distantly-related sequences.
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Failing to do this, may lead to inferences that are not valid because too much reliance is being placed on studies that are completely based on western theories or concepts (Zhu and Leung 2011).
As discussed above, differences between native and introduced ranges in the suite of habitats available for species to occupy can lead to inferences of niche expansion when no evolutionary change has actually occurred.
Because survival methods, including those based on the CIF, measure this increase in survival, these methods can lead to inferences where a treatment is preferred that doesn't confer patient benefit.
Although neither interpretative or extended inferences were assessed, the researchers suggest that seeing a baby dressed in a feminine way (pink clothing) could have led to inferences that the baby is weak as well as fragile and consequently impacted the child's proposed treatment (anticipatory set).
However, BP could still lead to correct inference if all evidence is "double counted" in equal amounts.
General error models are employed in cases where the residuals are heteroscedastic and correlated, and lead to valid inference on model parameter and predictive uncertainty.
Failure to control for these factors can lead to incorrect inference in time series analysis.
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