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Of these, the intragenic locations of 43 goat precursors were found to be conserved among human, mouse and cow, suggesting a conserved regulation of their expression between species regarding these intragenic miRNA.

We required the seed region to be conserved among human, mouse, rat, and dog genomes.

The selected sites were required to be conserved among human, rat, and mouse.

The cluster of TFBS within this module appeared to be conserved among human and mouse, but not among human and rat.

This result agrees with previous observations showing that large-scale recombination pattern and hotspots tend to be conserved among human populations [ 23, 24].

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We retrieved predicted TFBS information from the UCSC genome browser (hg18 genome assembly) and required TFBSs to be conserved among humans, mice and rats.

Region II is conserved among human, chimpanzee, and rhesus.

SRY binding sites are conserved among human, mouse and rat.

About 77% of the over-represented putative TFBSs are conserved among human, mouse and rat.

Although not conserved between human and mouse, these sites are conserved among higher mammalian animal species as follows: Region I is conserved among human, chimpanzee, rhesus, and guinea pig.

Predicted foreground (F) TFBSs were partitioned into three subsets: (1) sites that are conserved among human, rhesus, and mouse (HRM), (2) sites that are conserved between human and rhesus (HR) and (3) sites that are predicted in human but neither in rhesus nor in mouse (H).

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