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Genes were matched based on mapping to UniGene cluster IDs.
Chromosomal position information is based on mapping to GRCh37.
However, such arguments have been based on mapping to sequences outside of known exon splicing sites in cDNA encoding a different SVMP class, which were obtained from the venom transcript of a taxonomically distant snake [ 32].
This procedure is based on mapping to the quadratic assignment problem, solved iteratively by calls to a linear assignment solver, with added noise to help the alignment to escape from local score maxima, as in simulated annealing [ 40].
It is also unlikely that a V1R gene resides between the leftmost two BACs (CH35-319B4 and CH35-373N1) in the spretus assembly, since based on mapping to the musculus assembly, the missing inter-BAC region is only ~3.5 kb and this region does not contain a V1R gene in musculus.
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We developed an improved probe remapping protocol based on mapping probes to the genome sequence, removing nonspecific probes and grouping the probes into transcript level probe sets.
Methods based on mapping reads to known genes or functional categories are also restricted by the availability and completeness of existing databases.
The assembly of these reads can be difficult and analysis methods based on mapping reads to genes or pathways are also restricted by the availability and completeness of existing databases.
qCount provides fine-grained control over quantification, for example to include only alignments that are (anti- sense to the query region, to select anti- sensebased on mapping qualito or thereport counts for exon–exon junctions.
Coordinates are based on mapping of sites to the D. melanoaster genome [ 52].
Effectiveness methodology using a tree approach: This approach is based on mapping an accident database to a tree to classify the conditions of the injuries.
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