based on docking with

USAGE SUMMARY

The phrase "based on docking with" is correct and usable in written English.
It can be used in contexts related to technology, science, or any situation where a connection or interaction is established through a docking process. Example: "The software's functionality is based on docking with various external APIs to enhance its capabilities."

✓ Grammatically correct

Science

Human-verified examples from authoritative sources

Exact Expressions

1 human-written examples

The design was based on docking with mTOR protein.

European Journal of Medicinal Chemistry

Human-verified similar examples from authoritative sources

Similar Expressions

59 human-written examples

To potentially inhibit the ag85 complex, methyl 5-S-alkyl-5-thio-arabinofuranoside analogues were designed based on docking studies with ag85C derived from Mycobacterium tuberculosis.

Bioorganic & Medicinal Chemistry

The best HADDOCK structure, based on docking and STD scoring, is overlaid with the crystal structure in Figure 4A.

Biochemistry

Four residues, that is, Thr-72, Tyr-128, Ser-206, and Ser-216, were predicted to form hydrogen bonds and hydrophobic interactions with chitooctaose based on docking model.

eLife

Among these characteristics, the inability to bind to simple carbohydrates, to chitin-like oligosaccharides (two to eight residues GlcNAc), and to ovomucoid glycoprotein (rich in GlcNAc) was the most intriguing and determined the need to study the possible interactions with complex carbohydrates based on docking simulations.

BioMed Research International

All compounds were then viewed as docked on the receptor and manual selection was based on docking position to maximize diversity of docking locations on the EGFR dimer.

BMC Cancer

This is a limitation of classifying compounds based on docking scores.

Environmental Health Perspectives

These residues were chosen either based on docking or Scanprosite results (http://prosite.expasy.org/scanprosite ).org/scanprosite

BMC Plant Biology

The work was thereby undertaken to study the anti-malarial properties of two different series of curcumin analogues based on their docking interactions with PfATP6 and correlating the results with their anti-malarial activity.

Experimental Parasitology

There has been speculation, based on virtual docking studies with phenethylamines and tryptamines, that an oxygen atom in the ortho-position of the N-benzyl moiety may interact with a hydrogen bond donor (possibly the OH of Tyr 370 7.43) in the h5-HT2A receptor.

ACS Chemical Neuroscience

Based on the docking model of AtLYK5 with chitooctaose, the binding affinity was calculated at −8.9 kcal mol−1, a value comparable to the computational binding affinity of ECP6 (−9.0 kcal mol−1).

eLife

Expert writing Tips

Best practice

When using "based on docking with", ensure that the object being docked is clearly defined and that the specific docking parameters or software used are mentioned for reproducibility.

Common error

Avoid overstating the certainty of conclusions derived from molecular docking. Docking provides predictions, but experimental validation is crucial before drawing definitive conclusions.

Linguistic Context

The phrase "based on docking with" functions as a prepositional phrase, modifying a noun or clause by indicating the foundation or method upon which something is established. As Ludwig AI shows, it specifies that a particular design, analysis, or conclusion is derived from or relies upon molecular docking studies.

Expression frequency: Common

Frequent in

Science

100%

Less common in

News & Media

0%

Formal & Business

0%

Ludwig's WRAP-UP

In summary, the phrase "based on docking with" serves as a robust indicator of methodology, particularly within scientific literature. Ludwig AI confirms its grammatical correctness, while its consistent usage in scientific contexts highlights its role in attributing findings to molecular docking simulations. While the phrase is technically sound, ensure precision by specifying the software or parameters used in the docking process. Its alternatives offer subtle shifts in emphasis, but all retain the core concept of relying on docking studies. Overall, this phrase functions effectively to provide clarity and grounding in scientific discussions.

More alternative expressions

Phrases that express similar concepts, ordered by semantic similarity:

utilizing docking studies for

Highlights the use of docking studies as a methodology.

drawing from docking interactions with

Emphasizes the extraction of information from docking interactions.

informed by molecular docking of

Suggests that molecular docking results guided the process.

derived from docking simulations with

Indicates that docking simulations were the origin of the insights.

relying on docking analysis with

Focuses on the dependence on docking analysis.

guided by docking results with

Emphasizes that docking results served as a guide.

founded on docking data with

Highlights the foundation of the approach on docking data.

modeled after docking poses with

Suggests that docking poses were used as a template.

designed using docking models with

Focuses on the use of docking models in the design process.

constructed from docking experiments with

Indicates that docking experiments were the basis for construction.

FAQs

How do I use "based on docking with" in a sentence?

The phrase "based on docking with" indicates that something is derived from or relies upon the results of a molecular docking study. For example, "The drug's design was "based on docking with" the target protein's active site".

What can I say instead of "based on docking with"?

You can use alternatives like "utilizing docking studies", "informed by molecular docking", or "derived from docking simulations" depending on the specific nuance you want to convey.

What does it mean when a study says results are "based on docking with" a protein?

It means that the conclusions or models presented in the study are derived from computational simulations of how a molecule (like a drug candidate) interacts with a protein, specifically through a process called molecular docking.

Is there a difference between "docking studies" and results "based on docking with"?

"Docking studies" refers to the computational experiments themselves. Results ""based on docking with"" signifies that the interpretations, models, or designs are built upon the outcome of those docking simulations.