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Exact(6)
In this scenario, a base pattern may have very low or no identity with the diploids.
If multiple nucleotides have a base pattern with the maximum percentage identity with the diploid then no assignment is made.
In step 1, HANDS creates a base pattern for each read and counts the reads containing a particular base pattern.
A base pattern is regarded as the sequence of the pairs (position, nucleotide) for all HSPs found in the read.
A base pattern is assigned to a genome if at least 50% (a user-specified parameter) of its bases at HSP positions match with the corresponding diploid genome.
In step 1, HANDS considers each read aligned against the current gene in turn and creates a base pattern for that read.
Similar(54)
In the last six months, ESI created a basing pattern after suffering a sell-off.
A basing pattern is often a sign of accumulation by large institutions and can be identified by its sideways oscillations.
It shows the ETF has been bouncing up and down throughout most of the year, creating a basing pattern.
While creating the base patterns, HANDS groups the same base patterns together keeping track of the number of reads supporting a particular base pattern.
For paired-end data, alignments corresponding to both reads in the pair are considered together to generate a single base pattern for the pair.
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