ExPASy Translate tool

USAGE SUMMARY

The phrase "ExPASy Translate tool" is correct and usable in written English.
You can use it when referring to a specific tool available on the ExPASy server for translating nucleotide sequences into protein sequences. Example: "To analyze the genetic data, I utilized the ExPASy Translate tool to convert the DNA sequence into its corresponding protein sequence."

✓ Grammatically correct

Science

Human-verified examples from authoritative sources

Exact Expressions

25 human-written examples

In silico translation (Expasy, translate tool [ 46]) and gene structure prediction (GENSCAN Web Server http://genes.mit.edu/GENSCAN.html, [ 47]) were performed on the opsin-like sequences retrieved from the draft genome of A. filiformis.

BMC Genomics

Using the ExPASy Translate Tool (Swiss Institute of Bioinformatics), all six possible translation initiation positions (3 each on 5′ and 3′ strands) were assessed to be devoid of protein coding capacity, yielding evidence that these are indeed small non-coding RNAs expressed during rickettsial infection of host endothelium.

BMC Genomics

Open reading frames were located with ORF finder (http://www.ncbi.nlm.nih.gov/gorf/), and translation was carried out using the ExPASy translate tool (http://web.expasy.org/translate/).org/translate/

BMC Plant Biology

Open reading frames and translation of the contigs were carried out with the ExPASy translate tool [ 10] and confirmed by BLASTx with the GenBank NR database comparison to related sequences, as well as by comparison among the T. aestivum caleosin sequences as the data set was developed.

BMC Genomics

Predicted protein sequences from genomic and EST sequences were obtained using the ExPASy Translate tool [ 40].

BMC Evolutionary Biology

Potential open reading frames (ORFs) were searched using the Expasy translate tool [ 75].

BMC Plant Biology

Human-verified similar examples from authoritative sources

Similar Expressions

35 human-written examples

ExPASy-Translate tool was used to predict amino acid sequences [42].

Plosone

Nucleotide sequence from the whole genome of Geobacillus sp. strain WSUCF1 [ 15] was translated to amino acid sequence using ExPASy-Translate tool (http://web.expasy.org/translate/).org/translate/

BMC Biotechnology

In the second method the cDNA sequence was translated to protein sequence (ExPASy-translate tool, SIB; Swiss Institute of Bioinformatics) and then homologous proteins were searched using FASTA/SSEARCH/GGSEARCH/RCH - Protein Similarity Search (EMBL-EBI).

BMC Plant Biology

Genomic and cDNA sequences were translated to amino acids using Expasy's Translate Tool; the corresponding reading frame was determined based on the presence of the reported sequences for KETc1 and KETc7.

Plosone

The protein sequence of Oryzias latipes Barhl2 was obtained from translating the sequenced cDNA clone using the ExPASy online translate tool from Swiss Institute of Bioinformatics SIBB).

BMC Evolutionary Biology

Expert writing Tips

Best practice

When describing your methodology, explicitly state that you used the "ExPASy Translate tool" to ensure clarity and replicability of your research. Include the version number or date of access if possible.

Common error

Avoid writing "ExPASy translate tool" (lowercase 't'). Always capitalize 'Translate' as it's part of the tool's proper name.

Linguistic Context

The phrase "ExPASy Translate tool" functions as a noun phrase, specifically identifying a software application used in bioinformatics. Ludwig indicates its use is to translate nucleotide sequences into amino acid sequences.

Expression frequency: Uncommon

Frequent in

Science

100%

Less common in

News & Media

0%

Formal & Business

0%

Encyclopedias

0%

Ludwig's WRAP-UP

The phrase "ExPASy Translate tool" is a proper noun phrase identifying a specific bioinformatics tool. Grammatically correct and primarily used within formal scientific contexts, this term accurately pinpoints a resource for translating nucleotide sequences to amino acid sequences. Ludwig confirms that the phrase is used correctly in numerous scientific publications, and suggests that the tool can be referred to as "ExPASy translation tool", "ExPASy sequence translation tool", or "ExPASy DNA translation tool" as similar alternatives. Remember to capitalize 'Translate' when using the phrase, and when writing always include version or accessing date for clarity.

More alternative expressions

Phrases that express similar concepts, ordered by semantic similarity:

ExPASy translation tool

Replaces "Translate" with its noun form "translation".

ExPASy sequence translation tool

Specifies that the tool is used for sequence translation.

ExPASy DNA translation tool

Clarifies that the tool translates DNA sequences.

ExPASy protein sequence prediction tool

Focuses on the tool's function of predicting protein sequences.

ExPASy online translation tool

Emphasizes the online accessibility of the tool.

ExPASy's translation utility

Uses a more general term "utility" to refer to the tool.

ExPASy's translate function

Refers to the translation capability as a function.

ExPASy tool for sequence translation

Rephrases the structure to emphasize the tool's purpose.

Swiss Institute of Bioinformatics translation tool

Identifies the organization behind the tool.

Translate tool at ExPASy

Inverts the phrase to put emphasis on the tool.

FAQs

How is the "ExPASy Translate tool" used in bioinformatics?

The "ExPASy Translate tool" is used to convert nucleotide sequences (DNA or RNA) into their corresponding amino acid sequences, allowing researchers to predict protein sequences from gene sequences.

What are some alternatives to using the "ExPASy Translate tool"?

While the "ExPASy Translate tool" is widely used, other tools like the NCBI ORF finder or other in silico translation software can also be used for similar purposes.

How accurate is the "ExPASy Translate tool"?

The accuracy of the "ExPASy Translate tool" depends on the quality of the input sequence. It accurately translates the sequence based on the genetic code, but errors in the input sequence will result in errors in the translated protein sequence.

Where can I find the "ExPASy Translate tool" online?

The "ExPASy Translate tool" is available on the ExPASy website, hosted by the Swiss Institute of Bioinformatics (SIB). The URL is http://web.expasy.org/translate/.