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This is necessary for an efficient search and a zero penalty at the end of the procedure (this ad hoc scaling factor of 10 was found by optimizing the convergence to a configuration with zero penalty and maximal subset size).
Therefore, in B-cell antigenic determinant residues prediction, the penalty of misidentifying an antigenic determinant residue outweighs that of misidentifying a nonantigenic determinant residue (i.e., Cost > Cost; making an accurate identification usually indicates zero penalty (i.e., Cost = Cost = 0).
This, in turn, was because the Lastz tool [ 58] that was used for alignment was run with a zero penalty for ambiguous characters (Ns), rather than the default penalty score.
Similar(57)
Perez was also handed two penalty points.
Wilkinson had kicked one penalty for England.
Argentina missed six penalty attempts.
Two penalty attempts apiece failed.
The Devils have nine penalty killers.
One penalty, one mistake, could cost you a playoff game".
Greig Tonks converted and added five penalty goals, as Chris Pennell replied with three penalties.
Jonathan Sexton converted all three tries, and landed three penalty goals.
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