Sentence examples for yeast compendium from inspiring English sources

Gene expression data was given by the yeast compendium dataset [62].

Third, we used the Rosetta Yeast compendium [4] to produce a more quantitative benchmarking of FARO.

In addition, we demonstrate that FARO is superior to co-expression analysis in associating genes according to KEGG [16] and MIPS [17] annotations in the Rosetta Yeast compendium [4] Transcript profiling experiments are generally designed to assess the effect on gene expression of an experimental factor such as growth condition/stage, treatments, specific mutations, etc.

In the yeast compendium study, examining individual gene expression profiles was required to confirm various metabolic and regulatory roles [ 9].

The yeast compendium dataset comprises 9,335 probesets and 904 samples from experimental and observational data from anaerobic and aerobic growth conditions, gene knockout and drug perturbation experiments.

The approach is based on a yeast microarray compendium of chemostat steady-state experiments.

The work is based on a yeast transcriptome compendium, comprised of 170 microarray measurements (Knijnenburg et al. manuscript in preparation).

The genome-wide sensitivity profiles obtained from these treatments were then queried for their similarity to a compendium of drugs whose effects on the yeast collection have been previously reported.

Across the conditions of the compendium, yeast was grown on six different nitrogen sources.

To make the induced and the repressed gene groups, we consulted the gene expression data of this study (i.e. the Hughes et al. yeast mutant microarray compendium [ 27]).

Hence we computed Pearson's correlation of mRNA expression levels between two proteins (attribute 1 in Table 1) using publicly available time-series expression datasets (Rosetta compendium and yeast cell cycle).