Sentence examples for wrongly predicted as from inspiring English sources
TP are experimentally positive (toxic) compounds correctly predicted as positive, false positives (FP) are experimentally negative but wrongly predicted as positive.
Amongst the 65 kinases, two were wrongly predicted as CDKIs while amongst the 65 phosphatases, four were wrongly predicted as CDKIs by the PSSM-based SVM model.
Whereas we were able to detect host copies in most cases (see supplementary table S1, Supplementary Material online), candidates for PPC-located members of these protein complexes were not identified or shown to be wrongly predicted as PPC proteins.
For example, the gene may not be part of the input dataset, the gene model may be incorrect, the gene product may be an isoform, or an ortholog being wrongly predicted as paralog.
The reason was because most of the CD-BOX, LEADER, IRES, Intron-gp-1, SSU-rRNA5 and RIBOSWITCH sequences were wrongly predicted as 5.8S-rRNA, HACA-BOX, T-box, RIBOZYME, Intron-gp-1 and 5.8S-rRNA respectively.
More importantly, the 44 genes wrongly predicted as essential genes represent excellent targets for further refinement and expansion of the metabolism of iJN746 [see Additional file 4] as has been done for E. coli [ 45].
The penalty of a wrongly predicted conditional branch is typically almost as long as the pipeline length.
However, because the average size of these hypothetical ORFs was below 100 amino acids, it is possible that some small ORFans could as well be wrongly predicted ORFs or pseudogenes.
PolyPhen-2 trained on the HumDiv dataset wrongly predicted the benign mutation as deleterious, but confused only one disease causing mutation (CYP11B1 M88I).
On the same set, vipR showed a slightly better performance, and missed only three SNPs (of which two were also missed by the Poisson model), and also wrongly predicted the same sequence position as the Poisson model to be variant.
