Sentence examples for workbench assembly from inspiring English sources

90.78 and 87.41 % of reads from the 454 light organ and non-light organ libraries, respectively, uniquely mapped to transcripts in the 454/CLC Genomics Workbench assembly.

Contig sequences were generated using the CLC Genomics workbench 3.7 de novo assembly application.

We used the de novo method implemented in CLC Genomic Workbench v.7.0.2 to generate assemblies for each species, using the default settings.

The remaining unannotated reads were pooled and assembled into contigs using the de novo assembly algorithm of Genomics workbench.

We tested three different assembly methods: CLC Genomic Workbench de novo assembler, the Broad Institute's Trinity assembly pipeline (Grabherr et al. 2011), and Roche's gsAssembler (Newbler v2.8).

Thus we used the de novo assembly option in CLC Genomics Workbench to assemble 88% of reads into 13 072 contigs with an average length of 616 bp (Table  1, Additional file 1: Figure S1).

The CLC Genomic Workbench carried out the de novo assembly.

The red clover ESTs were combined with the Velvet assemblies by using a second de novo assembly on CLCbio Genomics Workbench version 4.0.0 (31 k-mer).

With the previous methods leading to limited success (percentage of reads aligned to the reference genome were below 50%), we then used CLC Genomics Workbench to do a de novo assembly of the reads and Blast2GO [ 19] to identify the best BLAST hit and to determine the gene ontology (GO) classification for each transcript, using the default settings.

Reads were assembled into contigs using de novo assembly in CLCBio's Genomics Workbench NGS suite (CLCBio, version 6.0.3) with default settings.

The company owns several well-lighted workbenches and ample tools required for assembly.