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For differential gene expression analysis between ER+ and ER− cell lines, we first eliminated genes without any reads across all 7 cell lines.
For differential gene expression analysis between conditions, we eliminated genes without any reads across all samples.
The TIC events with prostate-specific 5' genes each had TIC support from one or two prostate samples, without any reads from HBR or UHR.
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Male data was only used for connecting the contigs into longer scaffolds without introducing any reads from the highly heterochromatic Y chromosome and possible divergent regions between the neo-sex chromosomes into the assembly (Table 1).
A commuter, trapped in a stalled New Haven train at Old Greenwich without any reading matter, culled from the litter at his feet a piece… Comment on the Cuban situation & what Dorothy Kilgallen's column had to say about it.
The New Yorker, May 4 , 1968P. 41 A commuter, trapped in a stalled New Haven train at Old Greenwich without any reading matter, culled from the litter at his feet a piece of paper marked "Memo".
By Albert Hubbell and Burton Bernstein The New Yorker, May 4 , 1968P. 41 A commuter, trapped in a stalled New Haven train at Old Greenwich without any reading matter, culled from the litter at his feet a piece of paper marked "Memo".
Prior to the analysis, we filtered genes without any read counts in all samples from any two compared groups.
For Batch P, we required rearrangements to be supported by at least three read pairs in the tumour, but without any read pairs in either the matched normal or any other normal from the same batch, i.e. 19 or 20 additional normals.
Out of the total reads, any reads without a perfect 10-nt linker subsequence were directly discarded adjoining the insert, yielding of length 10 nt or longer that were subject to further processing.
To facilitate clipping of these, an option instructs NextClip to reexamine the non-matching read with looser matching criteria, clipping as necessary and moving into a new category E. Another option will always clip a specified number of bases from the end of any read without an adaptor match.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com