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Figure 4a shows that at a low TFBS prediction threshold (where more TFBS are predicted) it is more likely that sequences without a predicted TFBS are operonic (although only reaching a positive predictive value peak of ~0%).
Aggregating data and displaying discrepancies between annotations would present reviewers with an extensive number of possible errors including false positives, uncalled genes, genes without a predicted function, incorrectly predicted functions, and incorrect start sties.
Genes without a predicted function were annotated as Unknown.
The first subgroup comprises land plant proteins without a predicted transit peptide.
Based on results of proteomic studies, some proteins without a predicted signal peptide were assumed to be secreted.
Although most of the Tic62-NAD(P -related eukaryotic P -relatedreukaryoticd in the chloroproteinsne subgroup consists of proteins without areredicted transit peptide.
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Another 33.4% (1275 of 3819) were a PFAM domain-containing transcript partner of a predicted CDS without any PFAM domain.
Seven of the 19 without a BLAST hit had a predicted ICK scaffold from Knoter1D although none had this scaffold predicted by InterProScan (Table 3, Figure 4).
Designing an intervention that could be linked clearly to a predicted outcome without the possibility of confounding interpretations will present a considerable challenge.
Similarly, GSTs mapped less than 300 bp away from the extremity of a predicted CDS without cognate transcripts were not selected since they could correspond to the unknown UTR region of the corresponding mRNA.
This mutation results in a predicted free energy, Δ G37°, of −35.3 kcal/mol for the multibranch conformation, a gain of −6.2 kcal/mol in stability compared to that of the multibranch structure of the wild-type RNA, without a change in predicted Δ G37° for the hairpin (see captions to Figures 3 and 4).
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CEO of Professional Science Editing for Scientists @ prosciediting.com