Suggestions(4)
Exact(8)
Within this alignment, there is an exit for PA 611 (Broad Street).
For 2-MIB synthases from other microorganisms within this alignment, motifs are typically aspartate-rich: DDxxxE and NDxxSxxxE.
Within this alignment, conserved regions in the exon 2 were selected to design several primer pairs.
To identify putative regulatory motifs within this alignment, we scanned for putative cis-regulatory elements using the FootPrinter algorithm [ 18].
Within this alignment, insertions of TE, identified by the repeat masker program, were visually detected and mapped to the boPAG promoter sequences.
Within this alignment, 1217 positions were composed entirely of masked bases or gaps and masked bases due to failure of called nucleotides to meet coverage requirements.
Similar(52)
These regions are technically homologous because this fold arose through a series of internal duplications [ 32], but the fact these are different regions within paralogous structures indicates this alignment should not be used for polarizing the indels.
In an attempt to visualise the degree of phylogenetic conflict within this concatenated alignment a phylogenetic network was generated using the NeighborNet method [ 82].
During the development of Assemble, we have updated S2S to be able to infer a 3D model for any sequence within this structural alignment.
This resulted in 180 separate within-group alignment files of differing hierarchical level.
To do so, the alignment algorithm is conservatively designed to process sequence reads with at most one mismatch (although this can be easily changed within the alignment tool, and may become an option in future releases).
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