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Within this accession, ChIP-Seq data are found in the subseries GSE50723, and RNA-Seq data are in the subseries GSE50721.
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This accession was a better candidate than M. acuminata 'Akondro mainty', originating from Madagascar, which has been suggested previously (Raboin et al., 2005), although the accessions within the 'Mlali' subgroup are roughly genetically homogeneous.
Altogether 467 accessions of the A. lyrata complex were analysed: 295 accessions newly analysed within this study, 39 accessions sequenced by Schmickl et al. [ 28], and 133 accessions analysed by Koch and Matschinger [ 27].
A large number of resident SNPs were discovered within the accessions examined in this study.
Within these accessions, the tropical japonica sub-group was predominant (10 accessions out of 12); this result, together with the observation that tropical japonica have a lower level of average disease incidence, may indicate that higher breeding pressure for bakanae resistance was applied in the tropical japonica than on the temperate sub-group.
The lowest values for AS were found within the accessions of S. galapagense, with five accessions on which all whiteflies were dead after 5 days (AS = 0).
Although it is likely that intra-accession chloroplast polymorphism is present, particularly within wild accessions, this is compensated by the large number of accessions sampled.
Three categories of within-accession variation were apparent.
As expected, the within-accession variation was higher in the field than in the lab.
The results shown in Table 3 provide an estimate of polymorphic differences between groups and support the conclusion that within-accession genetic variation is low.
Four within-'Western' clade accessions of putative hybrid origin were identified; all had similar origins.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com