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Certain module definitions, strict coregulation in particular, and datasets, E. coli, and synthetic data generate modules that are better co-expressed within the expression data, which could explain why module detection methods generally also perform better on these datasets and module definitions (Fig. 2c,d).
The HoxB3a splv2 transcript itself appears to be expressed exclusively within the expression domain of the microRNA and is thus never expected to be translated into a functional HoxB3a protein.
Hierarchical clustering methods construct a hierarchy of all the genes within the expression matrix.
In approximately 60% of cases gene conversion was responsible for the deletion while in the rest of the cases deletion occurred within the expression cassette.
(1) An overall co-expression metric using the average correlation, (2) an extreme expression metric by looking at the top 5% average z-scores for every gene in the module, and (3) the root mean-squared deviation within the expression values of each module.
Expression of HXT2, that codes for an hexose-transporter was also measured, whilst no important change was observed within the expression of the other target genes.
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Within the expression-versus-repression debate lurk ancient, essential questions and the oldest myths.
This assured that both arithmetic operations appeared equally in every position within the expressions.
Due to the observation that many CYP5005 family members are within the "expression-silent" category, the assumed gene pseudonization events probably obscured the possible correlation between the genetic distance and gene-expression divergence in the CYP5005 family.
Based on Java reflection, currently functions provided by Java can be used within the expressions.
Within vertebrates, the expression patterns of dlx homologs is similar in early development [ 35, 42- 45].
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