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All pathway lists and references are provided in the Supplemental Data as Gene Lists S1 and References S1. Pathway expression data were formed as the arithmetic mean of all genes in the final dataset within the compiled lists, leaving one value for each tumor for each pathway.
The exaggerated reduction of diversity of X-linked regions in derived populations contained within the compiled dataset unfortunately remains difficult to explain.
Identifying the metabolites within the compiled database was performed through searching against an in-house mass spectral and retention index library as described previously [ 24], where a mass spectral match greater than 80% and a retention index match ± 20 provided a definitive identification.
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We have addressed this question within point 2 of the compiled editorial comments (see above).
Interrogation of expressed sequence from 1 kb above (5′) the start of the compiled sequence (position 1590926) to the end (3′) of the sequence (position 1594986) revealed the presence of a single Alu block 285 bp long beginning at nucleotide #90 of the compiled sequence and located within the 3′-terminal domain of exon 87 (variant 'm u', Figure 4).
Generally, the results of crude protein, ash, and carbohydrates were within the ranges compiled by Leger et al. (1986) from 15 references.
The current default is that the genome-specific nucleotide databases are searched with the MegaBLAST (Zhang et al., 2000) module, called from within the program blastn compiled from the NCBI C++toolkit.
Therefore, to view the vascular network within the brain, we compiled Z-stacks for analysis.
To assemble a curated set of serpin sequences within the Drosophilidae, we first compiled the orthologues from a tBLASTx search of the 12-species genes extracted from FlyBase.
A list of all medical facilities within the regions was compiled and assigned as urban or rural on the basis of Tanzania government regional administrative divisions.
Those EC numbers that did not have an associated reaction within this set of SEED reactions and were therefore not included within the models are compiled in Additional file 3.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com