Sentence examples for within that alignment from inspiring English sources

Given a multiple sequence alignment and a phylogenetic tree with branch lengths representing the neutral rate between the species within that alignment, GERP quantifies constraint intensity at each individual position in terms of rejected substitutions, the difference between the neutral rate and the estimated evolutionary rate at the position.

All positions within the alignment that contained gaps or missing data were ignored during pairwise comparisons.

Stretches of absolute identity within the alignment that lie between variant sites are known as 'fragments'fragments

A Bayes Empirical Bayes (BEB) analysis was also performed, searching for potential sites within the alignment that were under positive selection.

Because the GT site would be removed during the splicing process, the only candidate splice sites within the alignment that were analyzed, were those in which gene sequences had a GT and message sequences had a gap.

Outer fragments are runs of unique sites that may be evidence of past gene conversion events that originated from outside of the alignment or else from within the alignment but such that evidence of the source has been destroyed by later mutation or gene conversion (see http://www.math.wustl.edu/∼sawyer/geneconv/gconvdoc.html#AssessSig).

Calculation of conservation of CICPs within the alignments is calculated per alignment position by summing up the CICP occurrences per column and dividing by the total number of sequences that participated in the CICP study for that alignment.

However, only those SNPs that were successfully located within the alignment were processed further.

Second, a rigorous phylogenetic approach as implemented in the software package DualBrothers (Minin et al. 2005) was used to infer tree topologies and evolutionary rates across sites within an alignment that, in the first phase, showed evidence of recombination.

Furthermore, the GIWAXD signals do not change for the P3HT nanograting films parallel or perpendicular to the direction of incident X-rays, as shown in Fig. 4b, c, indicating that chains alignment within nanograting film is also edge-on and displays a random distribution in the in-plane direction.

That is, they are not contained within the alignment of either side of the read to the reference genome.