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As a natural consequence of their experimental design, many of these surveys tend to sequence redundant haplotype segments due to their high frequency in the base population, and the variants discovered within sequencing data are difficult to phase.
Such bias leads to regions of no sequence coverage within sequencing datasets and thus assemblies that contain multiple small gaps, leading to a large number of contigs and scaffolds even in modest sized genomes such as those of bacteria [ 8, 17] and chloroplast genomes [ 11].
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The within-sequence variance is estimated by (10).
As, the total variance estimation should decrease while the within-sequence variance should increase, and finally the PSRF should theoretically decline to 1.
However, no commonly used alignment program accounts for within-sequence homology or SSM.
They occur as laterally continuous bands or horizons within sequences of shallow-water marine or nonmarine deposits.
By nature, sequence determines structure and all interactions that drive folding are self-contained within sequence.
However, the perfect binary sequence has been known only for a length of N = 4 within sequence length 12,100 [19] 19].
We studied eight morphometric indices at two scales: whole island (~ 11,000 km2) and within sequences of reefal terraces (~ 3000 km2).
Within sequences, 126 parasequences stack into parasequence sets that in turn define lowstand, transgressive and highstand systems tracts.
With respect to (a) batch index b within sequence and (b) iteration index ℓ for b = 1.
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