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*Percent proteome conserved is the percentage conserved between two phages within different cluster as determined by CoreGenes.
The software MEGA 5 [ 30] allowed to calculate the mean genetic distances within different cluster in both subclades A and B by using Tamura Nei method.
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Clustering is useful in decreasing noise in data, and it also increases the focus throughout the data within different clusters.
Like the conventional clustering approaches for objects, the attributes within the same cluster are expected to possess high similarity, but within different clusters possess low similarity.
Furthermore, by examining the individual nodes to try and identify any sort of semantic coherence within a cluster one may identify the same nodes are frequently located within different clusters.
To validate microarray findings, we selected a few dozens of genes within different clusters for quantitative RT-PCR (qRT-PCR) analysis on an independent set of RNA samples.
Despite the lack of information for many sequenced strains, sensitive and resistant strains seem to group within different clusters (fig. 1).
In other words, higher length paths are more often encountered between nodes in the same cluster than between nodes within different clusters, such that the probabilities between nodes in the same complex will typically be higher in expanded matrices.
Table 3 lists the two superclusters identified in this analysis.> -wrap-foot> *proteomeproteome conserved is the percentage conserved between two phages within different clusters as determined by CoreGenes.
The CT-stimulated villous epithelium data sets were located within a different cluster from the Peyer's patch M cell and FAE data sets (clusters 5 and 4, respectively) implying distinct expression profiles.
The Saône-et-Loire isolates were erroneously separated within two different clusters based on difference in up to four VNTR loci between CC1 and CC3.
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