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Thus we calculate the probability q k; ne, nb, fe, fb) to observe at least k mutations within a given stretch of n residues composed of nb buried and ne exposed residues (Eq. 3 in Methods).
Next, we defined the SCD event as at least three S/T-Q di-motifs occurring within a given stretch amino acids.
Similar(58)
Our results suggest that MD can be applied to detect critical positions for β-sheet aggregation within a given amyloidogenic stretch.
Even a stretch of eight adenines in 10 bps within a given RNA sequence can already be sufficient for annealing of the oligo dT) primer at room temperature.
Likewise, within a given gene we found no enrichment of potential off target regions in more conserved stretches of the sequence (e.g. conserved protein domains) compared to less conserved stretches (e.g. non-coding UTRs; Fig. 4).
But what about within a given species?
However, shorter stretches of conserved sequences encoding C2 domains (~100 amino acids) provide a plausible sequence length to detect in their entirety within a given scaffold.
bSubcategory within a given ontology.
Basically, two different kinds of sequence similarity have to be considered, either the presence of a stretch of perfect identity of a given length within the oligonucleotide or a given similarity level over the whole oligonucleotide.
As a result, the first method (MTS grips) overestimates the stretch ratio at a given stress.
Viscoelastic effects should not substantially alter the stretch patterns at a given deformation.
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