Sentence examples for within a given alignment from inspiring English sources

Only a few amino acid types are usually seen within a given alignment location.

The lengths of alignments were also trimmed so all sequences in a given alignment were the same length.

K is the number of sites in a given alignment.

For a given alignment, an additional 76 degrees of freedom would be appropriate if the class frequencies were chosen to give the largest likelihood for that alignment.

All reconstruction methods require a phylogenetic tree inferred from a given alignment.

If a putative marker is actually a polymorphism between paralogs within a given subgenome, the expected alignment pattern would be exemplified by that shown for Category III (Fig. 3).

Given that the uORFs from orthologous genes were selected to be within a given length interval for alignment purposes, the high amino acid sequence similarity may suggest that these uORFs have a functional role (e.g., ribosomal stalling) that is mediated by the encoded uORF peptide.

Briefly, sensitivity measures the fraction of the structural alignment that is correctly recovered by a given sequence alignment, while precision measures the fraction of a sequence alignment that correctly reproduces the structural alignment.

This unique feature allows users to focus on a desired species or subgroup of all species for selective view of the phylogenetic tree and sequence alignment within a given gene family.

Bowtie was implemented in the –v alignment mode with the maximum number of mismatches set to 3. Paired end reads were aligned to the transcriptome with both read pairs needing a valid alignment within a given locus to be counted as a match.

Because multiple species of flies, bees, and mosquitoes have now been sequenced, we included orthologous regions (based on alignment within a given subfamily or genus) of the CRMs for each of the respective D. mel, An. gam, and A. mel CRMs where possible.