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In contrast, the European segments with the lowest divergence to Neandertals have a divergence to Venter that is 140% of the genome-wide average, which drops precipitously with increasing divergence to humans before rising again (Fig. 5A).
As expected, assignments were more accurate with increasing divergence, starting to level out at around 0.002.
The improvement in accuracy for the internal panel increases with increasing divergence time between the target and reference populations.
They observed a decrease in the number of successfully identified orthologs (contig/GRS gene pairs) with increasing divergence.
We also expect the number of orthologous relationships between TA contigs and a particular GRS gene i.e. gene coverage, to decrease with increasing divergence.
Although it might be expected that the amount of identifiable orthologous tRNAs will decrease with increasing divergence between species, we did not observe such a correlation.
Similar(44)
The same relationship is found for the data when divided into the JTM and ROW datasets, with increased divergence at lower magnitudes due to the superior record in the JTM region (Additional file 1: Figure S4). Figure 8 shows the median ages for eruptions in each magnitude interval for each of the 19 regions in the LaMEVE database, demonstrating considerable recording variability around the globe.
The incongruence between BCI and LFDP may be due to increased long-branch attraction if a community, such as the LFDP, is comprised of fewer taxa with increased divergence times among adjacent clades that would complicate phylogenetic reconstruction.
Genomic barriers to gene flow are heterogeneous in strength and accumulate with increased divergence.
Mapping of sample read pools to reference sequences revealed several trends, including decreased alignment success with increased read length and decreased variant recovery with increased divergence.
So a longer review period corresponded with an increasing divergence between the two models.
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