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The ORFs aligned against ORFs with high alignment lengths (match length of at least 50 amino acid) and high identities (≥60%) were listed as potential paralogous ORFs.
The alignment was cropped to only include sites with high alignment quality resulting in only 155 158 bp that aligned unambiguously between species.
Carbon nanotube (CNT) film with high alignment and elevated densities was prepared by taking CNT ribbons as component unit fabricated by floating catalyst chemical vapor deposition (FCCVD) method.
Here, we report the use of a simple and versatile technique based on doctor-blading to fabricate staggered composites of microscopic alumina tablets with high alignment in a chitosan matrix.
Applying stretching and pressing is effective for production of superior CNT sheets with high alignment and dense packing of CNTs, thereby supporting the development of high-performance CNT composites.
Carbon nanofibers (CNFs) have attracted considerable attention in recent years because they have superior mechanical strength and excellent electronic properties [1, 2] due to their unique structures, which are low grain boundary, 1D structure with high alignment and high surface area to volume ratio.
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The shorter alignments correlate with higher alignment accuracy (Smod), but are less informative as they exclude more homologous regions.
Nevertheless, it seems that in most cases, alignments with higher Alignment Scores have better BALiBASE score as well.
The first sequence of each species category in the MSA is the sequence from that category with highest alignment score.
The collected targets were further sorted and the best molecules with highest alignment score and lowest MFE of the structure were selected.
One simple and widespread approach to identifying orthology is the bidirectional best hit (BBH) method (also known as reciprocal best hit or reciprocal Blast hit): call as orthologs all pairs of genes between two species that are more similar (i.e., with highest alignment score) to one another than to any other gene in the other species (Overbeek et al. 1999).
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com