Sentence examples similar to with equivalent alignment from inspiring English sources

This can be of relevance for models in the 'liganded' category, since the introduction of the modelled ligand can influence the assessment compared with a seemingly equivalent alignment on a different category.

For example, reads with multiple equivalent alignments to the genome could be eliminated altogether or reads counted only when they map to gene coding regions or to known exons [ 13].

Equivalent alignment patterns can be observed in the remaining 10 reads.

The equivalent alignment using strict mode, shown in the bottom part of the table, more clearly differentiates the tools, with the margin between Trimmomatic in Maximum Information mode and the alternatives widening considerably.

PASA acts to subsume equivalent alignments to form a number of maximal transcript assemblies (termed maximum transcripts) that represent alternative mRNA isoforms consistent with the data from the alignment cluster.

Alignment of blots with equivalent protein stained 2D-PAGE gels allowed identification of 20 unique proteins (Figure 2b & d and Table 1, with specific details of peptide MS/MS scores shown in Supplementary Table S1).

Simrank similarity scores are not equivalent to alignment percent similarities.

The anomalous transcript sequences include CDS which explains why attempts to align the rhesus model protein with other species reveal equivalent anomalies (no alignment for amino acids 1 247 and 3683 3730 of the rhesus protein with its human ortholog - [GenBank:NP_056193.2]).

E-value (or expectation value or expect value) represents the number of different alignments with scores equivalent to or better than a given threshold S, that are expected to occur in a database search by chance.

An E-value or Expection value represents the number of different alignments with scores equivalent or better than the sum of substitution and gap scores that is expected to occur in a database search by chance.

In the world of sequence data this is equivalent to an alignment with a single column, albeit one where each character can take any of a huge number of states.