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Following validation of the microarray results with a sub-set of 16 genes assayed with qRT-PCR, we utilized these lists to identify pathways and gene ontology terms associated with each breed by using those gene lists representing expression greater in one breed over another.
Get familiar with each breed type in the group, the retrievers, then the pointers, then the spaniels, then the setters (remember this is an example for the SPORTING group) Go through each "breed type" in each group, this will make it easier to remember in your head.
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Both variants were detected within each breed with the exception of Hereford, and the heterozygosity varied between 0.000 and 0.524.
As expected, the level of pair-wise LD as measured by r2 decreases with marker distance within each breed.
Determination of the number of contiguous markers within each breed with MAF ≤ 0.01 to define a sweep region required a trade-off between type I error and the size of the detected sweep region.
Realized accuracies within each breed varied with the breed-specific heritability estimates for each trait.
The 95% confidence limit for the proportion of dogs with positive test results within each breed was calculated.
A QTL is considered with equal frequency in each breed, with an effect of 1 for the second allele.
The average degree was calculated for the network of animal exchanges of each breed with all herds with identified exchanges, the first time, and only with herds with at least five genotyped individuals, the second time.
They estimated the energy requirements of each breed, with guidance from the American Kennel Club, and the mass of food each breed needs to consume.
Hare aims to change that, and to show the unique smarts of each breed with empirical data.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com