Sentence examples similar to with correlation complete from inspiring English sources
Gene expression datasets were analyzed by Cluster 3.0 which was originally developed by Michael Eisen, with parameters as hierarchical clustering, uncentered correlation, complete linkage (http://bonsai.ims.u-tokyo.ac.jp/~mdehoon/software/cluster/software.htm ctv), and visualized in software Java TreeView [81].
We sort the features in the descending order for each of the three rankings and we remove features with correlation <0.05 for the complete and local correlation rankings and with success rate <0.5 in case of the success rate ranking.
All genes kept for analysis were used for hierarchical clustering analysis using TmeV [ 85] (http://www.tm4.org/mev.html) with Pearson correlation and complete linkage clustering parameters.
We first used hierarchical clustering with correlation distance as similarity measure (complete linkage).
Correlations with complete blood counts and database gene expression analysis (SymAtlas, http://biogps.gnf.org) were used to identify highly cell-type selective genes.
The complete filtered raw data can be found in Additional file 1. Sample hierarchical clustering was performed with TIGR MeV software using the Pearson uncentered correlation with complete linkage.
Hierarchical clustering was performed on both the gene list and the embryonic stages using Spearman correlation with complete linkage clustering.
The data were standardized and pairwise similarity between compounds was computed using Pearson correlation with complete linkage in GENE-E (http://www.broadinstitute.org/cancer/software/GENE-E/).
The dendrogram and heatmaps of protein abundance were created and visualized using Genesis [ 64] with Pearson's correlation and complete linkage.
To reduce dimension of explanatory variables and identify bacteria that were potentially acting in groups we will conduct hierarchical clustering analysis using Spearman rank correlation with complete linkage and groups identified based on correlations >0.5.
The metrics employed was uncentered correlation with the complete linkage option.
