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In the latter case, DIAS is initialized with a default size of bloom filters and computes the system size using the COUNT aggregation function.
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In the case, when a size is not defined, a default size of 32-bit is given.
Finally, each putative binding site is compared with its surrounding background in a local (default size of this centered surrounding windows is 5,000; 10,000 and 15,000nt) and global (genome-wide background) context.
It has functions and a default size and a default color, which is black.
The square is drawn with the pen set to its default size of 4 pixels.
The default size of the figure is 1024 × 768 dots.
The basic strategy was to select the first cycle of the LRE window (referred to as the "start cycle"), which defines the bottom of the LRE window, and to start with a default window size of three cycles.
First read alignment results were obtained with MegaBLAST employing a default word size of 28 for an initial exact match, followed by reassignment of unaligned reads and reads with bit scores lower than 74 using the slower, more sensitive BLASTN algorithm with word size of 11 for an initial exact matches.
We ran the method of Magwene et al. with a default genetic window size of 30 cM, as recommended by the authors [ 7].
The correlator sampling interval is adjustable and has a default step size of 235 ps or approximately one pulse width.
We used default parameters with a fragment size of 200 bp and with "-mask" parameter to use the repeat-masked sequences.
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