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The experiment wise significance level was protected by employing the Tukey method in examining comparisons.
The comparison wise significance was computed using 1,000 permutations as implemented in TASSEL software.
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Only 2 families showed nominally significant effects, but chromosome-wise significance at P < 0.05 was not obtained for either family.
This relationship was found to be significant at the experiment-wise significance level (r = −0.57, p = 0.00, 95% CI [−0.76, −0.36]).
We declared a significant SNP at the genome-wise significance level if a raw P value <0.05/N, here N is the number of SNP loci tested in analyses.
All significant associations were retained at 8% experimental-wise significance level by permutation test.
QTL effects were considered significant if they exceeded the 5% chromosome-wise significance threshold (pc-value < 0.05).
Sixty-three significant QTL were detected at the 5%% chromosome-wise significance level by LDLA (30 for LFEC and 33 for IgAt).
All LPR scores were significant at the chromosome-wise level, none reaching genome-wise significance.
The LOD score significance thresholds were calculated by permutation tests in MapQTL 5.0, with a experiment-wise significance level of α < 0.05, n = 1000 for significant linkages.
Although the test for dominance (dom) is significant for bodyweight the actual QTL does not reach linkage group-wise significance.
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