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The various element-wise intersections and summations would also take O(G) time.
We found 5 CpG loci in the three-wise intersection, above the number expected (p_val 0.019).
Common regions in all four data sets were selected using Base-pair-wise intersection (option AND) on the UCSC Table Browser.
Briefly, triplet frequencies were determined in non-coding genomic X.tropicalis DNA (JGI4.2, GL172663:1-4,425,020, UCSC table browser basepair-wise intersection of complemented Human Proteins with UCSC xenTro3 assembly), whereas X.tropicalis codon frequencies were downloaded from http://www.kazusa.or.jp/codon/cgi-bin/showcodon.cgi species=8364.jp/codon/cgi-bin/showcodon.cgi species=8364
Table 1 Traffic composition and mode-wise share at all intersections Intersection no.
Then the closure test rejects an elementary hypothesis, controlling the family wise type I error rate if the intersection hypothesis and can be rejected at local level α.
Table 1 shows the traffic composition at all intersections as well as the mode-wise share (in %).
We defined leukemia-associated and differentiation-associated miRNAs from the intersections of two sets of pair-wise comparisons.
As illustrated in Figure 7, transcripts meeting these criteria are identified by performing an ANOVA of the intersection of the four individual pair wise comparisons - GvC, NvC, GvD and NvD - or the GNvCD group comparison.
In brief, every list of miRNAs and mRNAs was determined from the intersections of two sets of pair-wise comparisons (e.g., Figure 3C) that incorporated the expression data from all three cell lines.
However, the binary-function implementation can benefit significantly if the functions are implemented as bit vectors, and the shifts and intersections are computed using hardware-level bit-wise operations.
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