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A soft adjacency matrix specifies pair wise connection strengths and all nodes are connected.
To transform the co-expression measure (here the absolute value of the Pearson correlation matrix) into measures of pair wise connection strengths, one can make use of an adjacency function.
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In addition to this depth-wise connection, there are lateral connections to other epistemic paradoxes such as the knower paradox and the problem of foreknowledge.
Similar to our work, [46] proposed pair-wise connection probability by the configuration model and used the p-value to measure statistical significance of the links.
This forms a pair-wise connection weight matrix for each species.
Comparison of pair-wise connections revealed a marked reduction of connectivity between left TLE patients and controls, which was strongly lateralized to the ipsilateral temporal lobe.
For example, as the Rutgers scientist Randy Gallistel has argued, the common theory that equates neuron-wise connections with memory may be wrong; smaller molecules like RNA might be a significantly more energy-efficient substrate for memory.
The wiring ratio is based on the number of pair-wise active connections relative to the total number of possible pair-wise connections.
Connectomes were then compared using two complementary methods: permutation tests for pair-wise connections and Network Based Statistics to probe for differences in large network components.
Thus, a good framework for visualizing networks performs well in recapitulating known group-wise connections and clustering.
In Fig. 4B, six additional classes from the multiple GPCR superfamilies have been added to the analysis, and in order to observe group-wise connections, the threshold has been scaled back to a statistically insignificant E-value of 1×10−2.
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CEO of Professional Science Editing for Scientists @ prosciediting.com