The resulting distribution of random window coverages was then used to determine the significance of observed window coverages.
Additionally, we selected the 100 most duplicated genes according to the average of 5 kub window coverages of the duplicated merged intervals and identified the matched InterPro domains for these genes.
After testing some models (see Additional file 4), we choose to fit the data sample of single BAC 5 kub window coverages for each masking setting with a model made of four Gaussian distributions (G1, G2, G3 and G4).
To visualize our results, the mean coverages of consecutive 100-bp windows of the mitochondrial genome are plotted in Figure 3. On average, no window displayed coverage below 500×, although a single sample presented low coverage, likely because of either an unknown deletion or machine error.
Eastern, when NBC's window of coverage began.
But if the Act goes out the window, that coverage might too.
Preliminary examination of the flanking regions surrounding the R2GH clusters in RH indicated that they occupy syntenic positions to three of the DM clusters, with the position of the fourth DM cluster falling outside the window of coverage in RH.
∏ i p g (i ) n g, i n g, i !, where N g = ∑ i n g, i is the total number of windows with GC content g, n g, i is the total number of windows with coverage i and GC content g, p g (i) is the overall probability of mapping i reads onto any window with GC content g.
Conversely windows with coverage lesser than the lower bound of HPD credible interval are deemed deletions.
