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Xylem was chosen as it typically holds a wider transcript diversity when compared to other common tissues such as leaves or flowers (G. Pasquali, unpublished), thus potentially increasing the pool of genes sampled.
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These data indicate that ATR slightly complements ATM in the transcriptional response to IR. Genome-wide transcript profiling coupled with analysis of the developmental features of atm and WT might help to reveal cell functions and networks that are specific or critical to plant fate after exposure to a sublethal dose of IR.
Further, a detailed genome-wide transcript analysis of freshly cloned parasites revealed the potential for tremendous transcriptional plasticity in genetically identical parasite lines (Rovira-Graells et al., 2012).
Further research on genome-wide transcript regulation in vivo is indispensable to build the knowledge base on normal tissue responses to ionizing radiation exposure.
Genome-wide transcript profiling was conducted on a high-density 105 K Agilent microarray to investigate diurnal rhythms.
The Illumina Human-6v2 Expression BeadChips were used for a complete genome-wide transcript profiling of peripheral blood mononuclear cells (PBMCs) from 18 RA patients and 15 controls.
Re-analysis of genome-wide transcript profiling using MapMan software showed that 'PS and signaling' bins (Table 2, Table S2), including the phytochromes, have an altered transcription (overall a down-regulation) upon MeJA treatment.
With the present study we aimed to expand our current understanding of the impact of chloroquine on gene expression in the mosquito host by conducting a genome-wide transcript analysis.
Genome-wide transcript analysis showed that B. anthracis undergoes considerable changes in gene expression during growth in iron-depleted media, including the regulation of known and candidate virulence factors.
The bacterial RNA samples purified from 8 eschars derived from 7 individual patients (Table 1) were subjected to whole-genome-wide transcript expression profile analysis and compared to the transcriptome of R. conorii grown in vitro and used as reference.
To further characterize the cellular response to eIF4G gene deletion we examined genome-wide transcript abundance in wild type, tif4631Δ and tif4632Δ cells (Fig. 3A right; raw data is available at ArrayExpress accession number: E-MEXP-2400; analysis code is available in the Source Code S1 file in Supporting Information).
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