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We propose ChloroMitoSSRDB that offers a wide visualization of perfect and imperfect repeats across the chloroplast and mitochondrial genomes with corresponding genomic coordinates.
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It is well known that genome wide visualizations, particularly in circular context, can have limited spatial capacities and dense graphs are not informative.
Genome-wide visualization of paralogs was done with Circos (Krzywinski et al. 2009).
Genome-wide visualization of the global methylation data was performed with the IGB version 6.5.1/6.5.1_5.
Genome-wide visualization of regulatory networks and metabolic pathways covered by the reference regulons are available for all studied genomes.
Even if no peaks are detected, chromosome-wide visualization may help to identify preferential protein localization regions.
Furthermore, the genome-wide visualization of methylation sites, the visualization of significantly differentially methylated sites and downstream analyses have not been addressed optimally, yet.
This web-based genome viewer allowed users to explore bacterial genomes in linear maps and create a genome-wide visualization of data in circular maps.
We also produced an antibody against the phosphorylated form of RNAPII, which allowed the genome-wide visualization of the state of RNAPII phosphorylation using ChIPseq.
The whole genome chromosome-wide view enabled genome-wide visualization of CpG10 and showed several regions where core CpG islands are absent but CpG10 were densely mapped.
Genome-wide visualization of publicly available and experimental data was accomplished by using an in-house developed genome browser (H2G2, http://h2g2.ugent.be/biobix.html).html
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