In this study we provide a novel algorithm, CNNLOH Quantifier, for genome-wide quantification of CNNLOH from SNP array data.
However, an accurate genome-wide quantification of active transcription factors in various tissues is currently not feasible.
A genome-wide quantification of mapped reads generated by standard SCS or bareback-processing corroborates these findings (Fig. 4c).
(G ) Genome-wide quantification of epigenetic conservation.
As no information was available for lampreys, we have performed genome-wide quantification of HPAA tracts.
This result thus suggests the feasibility of using PET counts for the pathway-wide quantification of gene expression levels.
10.7554/eLife.02510.006 Figure 2. Genome-wide quantification of pre-mRNA and mRNA abundance by RNA-seq.
Motivation: Next-generation sequencing has become an important tool for genome-wide quantification of DNA and RNA.
Whole-transcriptome sequencing (RNA-seq) technology has emerged as a revolutionary platform for genome-wide quantification of mRNA transcripts.
However, visualization cannot quantify expression levels nor find global patterns; the steps that were described before provide the systematic genome-wide quantification of information in RNA-seq experiments.
The genome-wide quantification of gene expression levels allows us to make the transition from single-gene-based research to molecular network-based analysis.
