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Mining a GPML file is much more difficult due to its wikistyle; and there are slight variations among individual GPML files even in the same organism, like some key tags may be in upper case in one file but lower case in another, random insertions of whitespace character, etc. Due to these variations, the regular expressions used for performing the extraction must be very robust.
// remember nlen ignores whitespace!
Leave whitespace on your slide.
Extra whitespace is always ignored.
Fields are separated by runs of whitespace.
Leading and trailing whitespace are ignored.
tokenize.whitespace: if set to true, separates words only when whitespace is encountered.
Standards should define use of whitespace and formatting of comments.
Five to follow Gidi Traffic Instalagos Whitespace Lagos Nigeria Nostalgia Nothing to do in Lagos.
% values are handled by starting successive lines with whitespace.
The list may be delimited with commas or whitespace.
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CEO of Professional Science Editing for Scientists @ prosciediting.com